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ATP2C1 ATPase secretory pathway Ca2+ transporting 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100433119, updated on 3-Apr-2024

Summary

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Gene symbol
ATP2C1
Gene description
ATPase secretory pathway Ca2+ transporting 1
Locus tag
CR201_G0030533
See related
Ensembl:ENSPPYG00000014097
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as
SPCA1
Orthologs
human mouse all
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Genomic context

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See ATP2C1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 2 NC_085928.1 (140324431..140484488)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 3 NC_071988.1 (128131261..128291262)

Chromosome 2 - NC_085928.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129058638 Neighboring gene uncharacterized LOC129058637 Neighboring gene glutathione S-transferase omega-1-like Neighboring gene cysteine and glycine-rich protein 2-like Neighboring gene asteroid homolog 1 Neighboring gene uncharacterized LOC112132770 Neighboring gene NIMA related kinase 11 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC129058640

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp469K1214

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-transporting ATPase type 2C member 1
Names
ATP-dependent Ca(2+) pump PMR1
ATPase 2C1
ATPase, Ca++ transporting, type 2C, member 1
Ca(2+)/Mn(2+)-ATPase 2C1
Calcium-transporting ATPase type 2C member 1
secretory pathway Ca(2+)-transporting ATPase type 1
XP_009237588.1
XP_024101168.1
XP_024101169.1
XP_024101172.1
XP_054408554.1
XP_054408555.1
XP_063578256.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085928.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    140324431..140484488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054552579.2 → XP_054408554.1  calcium-transporting ATPase type 2C member 1 isoform X1

  2. XM_054552580.2 → XP_054408555.1  calcium-transporting ATPase type 2C member 1 isoform X2

  3. XM_024245404.3 → XP_024101172.1  calcium-transporting ATPase type 2C member 1 isoform X6

    UniProtKB/TrEMBL
    A0A2J8U3P8, A0A8I5T928
    Conserved Domains (1) summary
    TIGR01522
    Location:7 → 887
    ATPase-IIA2_Ca; golgi membrane calcium-translocating P-type ATPase

  4. XM_009239313.4 → XP_009237588.1  calcium-transporting ATPase type 2C member 1 isoform X5

    UniProtKB/TrEMBL
    A0A2J8U3Q8, A0A8I5TSH3
    Related
    ENSPPYP00000040575.1
    Conserved Domains (6) summary
    TIGR01522
    Location:7 → 887
    ATPase-IIA2_Ca; golgi membrane calcium-translocating P-type ATPase
    COG4087
    Location:540 → 663
    COG4087; Soluble P-type ATPase [General function prediction only]
    pfam00122
    Location:90 → 323
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:710 → 882
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:10 → 78
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam13246
    Location:394 → 477
    Cation_ATPase; Cation transport ATPase (P-type)

  5. XM_024245401.3 → XP_024101169.1  calcium-transporting ATPase type 2C member 1 isoform X3

    UniProtKB/TrEMBL
    A0A6D2Y5W0, A0A8I5T928, A0A8I5UAC2
    Conserved Domains (1) summary
    TIGR01522
    Location:23 → 903
    ATPase-IIA2_Ca; golgi membrane calcium-translocating P-type ATPase

  6. XM_024245400.3 → XP_024101168.1  calcium-transporting ATPase type 2C member 1 isoform X3

    UniProtKB/TrEMBL
    A0A6D2Y5W0, A0A8I5T928, A0A8I5UAC2
    Related
    ENSPPYP00000026728.1
    Conserved Domains (1) summary
    TIGR01522
    Location:23 → 903
    ATPase-IIA2_Ca; golgi membrane calcium-translocating P-type ATPase

  7. XM_063722186.1 → XP_063578256.1  calcium-transporting ATPase type 2C member 1 isoform X4

    UniProtKB/TrEMBL
    A0A2J8U3Q4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5R5K5.1 GenPept UniProtKB/Swiss-Prot:Q5R5K5

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