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NPTX1 neuronal pentraxin 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100431838, updated on 26-Mar-2024

Summary

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Gene symbol
NPTX1
Gene description
neuronal pentraxin 1
Locus tag
CR201_G0021575
See related
Ensembl:ENSPPYG00000008723
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 19 NC_072004.2 (95937294..95947910, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 17 NC_072002.1 (84404192..84414810, complement)

Chromosome 19 - NC_072004.2Genomic Context describing neighboring genes Neighboring gene ring finger protein 213 Neighboring gene endonuclease V Neighboring gene large ribosomal subunit protein eL32-like Neighboring gene large ribosomal subunit protein eL31-like Neighboring gene regulatory associated protein of MTOR complex 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axonogenesis involved in innervation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal pentraxin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072004.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    95937294..95947910 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002827926.5 → XP_002827972.1  neuronal pentraxin-1

    UniProtKB/TrEMBL
    A0A2J8Y2G9, A0A6D2WXF7, H2NUZ8
    Related
    ENSPPYP00000009789.2
    Conserved Domains (2) summary
    smart00159
    Location:222 → 428
    PTX; Pentraxin / C-reactive protein / pentaxin family
    cl25732
    Location:52 → 221
    SMC_N; RecF/RecN/SMC N terminal domain

RNA

  1. XR_008515224.2 RNA Sequence

  2. XR_008515226.2 RNA Sequence

  3. XR_008515225.2 RNA Sequence

  4. XR_008515223.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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