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EOMES eomesodermin [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100431463, updated on 26-Mar-2024

Summary

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Gene symbol
EOMES
Gene description
eomesodermin
Locus tag
CR201_G0006559
See related
Ensembl:ENSPPYG00000014055
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See EOMES in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 2 NC_085928.1 (126948014..126954737)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 3 NC_071988.1 (114771023..114777742)

Chromosome 2 - NC_085928.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129058345 Neighboring gene coiled-coil domain-containing protein 172-like Neighboring gene uncharacterized protein KIAA1143-like Neighboring gene small ribosomal subunit protein eS27-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CD8-positive, alpha-beta T cell differentiation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endodermal cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mesoderm formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eomesodermin homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085928.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    126948014..126954737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009239255.4 → XP_009237530.1  eomesodermin homolog isoform X1

    UniProtKB/TrEMBL
    A0A2J8WYY0, A0A6D2Y874, H2PBA9
    Related
    ENSPPYP00000015726.2
    Conserved Domains (2) summary
    pfam00907
    Location:268 → 455
    T-box; T-box
    pfam16176
    Location:481 → 702
    T-box_assoc; T-box transcription factor-associated

  2. XM_002813984.5 → XP_002814030.1  eomesodermin homolog isoform X2

    UniProtKB/TrEMBL
    A0A2J8WYW2
    Conserved Domains (2) summary
    pfam00907
    Location:268 → 455
    T-box; T-box
    pfam16176
    Location:462 → 683
    T-box_assoc; T-box transcription factor-associated

  3. XM_009239258.4 → XP_009237533.1  eomesodermin homolog isoform X3

    See identical proteins and their annotated locations for XP_009237533.1

    UniProtKB/TrEMBL
    A0A2J8WYY8
    Conserved Domains (2) summary
    pfam00907
    Location:1 → 161
    T-box; T-box
    pfam16176
    Location:187 → 408
    T-box_assoc; T-box transcription factor-associated
Nucleotide Protein
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