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TIGD7 tigger transposable element derived 7 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 100428553, updated on 8-Mar-2024

Summary

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Official Symbol
TIGD7provided by VGNC
Official Full Name
tigger transposable element derived 7provided by VGNC
Primary source
VGNC:VGNC:99611
Locus tag
EGK_12428
See related
Ensembl:ENSMMUG00000040952
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human all
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Genomic context

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See TIGD7 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (3344008..3358808, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (3632347..3647164)

Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106994924 Neighboring gene MEFV innate immunity regulator, pyrin Neighboring gene translation initiation factor IF-2-like Neighboring gene zinc finger protein 263 Neighboring gene zinc finger protein 75a Neighboring gene 60S ribosomal protein L7-like 1 Neighboring gene olfactory receptor 2C1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tigger transposable element-derived protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001194837.1 → NP_001181766.1  tigger transposable element-derived protein 7

    Status: PROVISIONAL

    Source sequence(s)
    QNVO02000290
    UniProtKB/TrEMBL
    H9EVZ8
    Conserved Domains (3) summary
    pfam03221
    Location:77 → 135
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:4 → 55
    HTH; Helix-turn-helix domains
    cl21549
    Location:207 → 399
    rve; Integrase core domain

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041773.1 Reference Mmul_10 Primary Assembly

    Range
    3344008..3358808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002802371.3 → XP_002802417.1  tigger transposable element-derived protein 7 isoform X1

    See identical proteins and their annotated locations for XP_002802417.1

    UniProtKB/TrEMBL
    A0A1D5QK26, A0A8J8XLB2, G7NP74, H9EVZ8
    Related
    ENSMMUP00000048399.1, ENSMMUT00000053363.2
    Conserved Domains (3) summary
    pfam03221
    Location:77 → 135
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:4 → 55
    HTH; Helix-turn-helix domains
    cl21549
    Location:207 → 399
    rve; Integrase core domain

  2. XM_015125392.2 → XP_014980878.1  tigger transposable element-derived protein 7 isoform X1

    UniProtKB/TrEMBL
    A0A1D5QK26, A0A8J8XLB2, G7NP74, H9EVZ8
    Conserved Domains (3) summary
    pfam03221
    Location:77 → 135
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:4 → 55
    HTH; Helix-turn-helix domains
    cl21549
    Location:207 → 399
    rve; Integrase core domain

  3. XM_015125391.2 → XP_014980877.1  tigger transposable element-derived protein 7 isoform X1

    UniProtKB/TrEMBL
    A0A1D5QK26, A0A8J8XLB2, G7NP74, H9EVZ8
    Conserved Domains (3) summary
    pfam03221
    Location:77 → 135
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:4 → 55
    HTH; Helix-turn-helix domains
    cl21549
    Location:207 → 399
    rve; Integrase core domain

  4. XM_028840333.1 → XP_028696166.1  tigger transposable element-derived protein 7 isoform X1

    UniProtKB/TrEMBL
    A0A1D5QK26, A0A8J8XLB2, G7NP74, H9EVZ8
    Conserved Domains (3) summary
    pfam03221
    Location:77 → 135
    HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain
    cl21459
    Location:4 → 55
    HTH; Helix-turn-helix domains
    cl21549
    Location:207 → 399
    rve; Integrase core domain
Nucleotide Protein
Heading Accession and Version

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