SPATA17 spermatogenesis associated 17 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: SPATA17provided by VGNC
Official Full Name: spermatogenesis associated 17provided by VGNC
Primary source: VGNC:VGNC:96065
See related: Ensembl:ENSSSCG00000029778
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Low expression observed in reference dataset See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	10	NC_010452.4 (7797448..8120892)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	10	NC_010452.3 (9884741..10017266)

Chromosome 10 - NC_010452.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in establishment of meiotic spindle localization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in mitotic cell cycle	IEA Inferred from Electronic Annotation more info	PubMed
involved_in spindle organization	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in spindle pole	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: spermatogenesis-associated protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001184753.1 → NP_001171682.1 spermatogenesis-associated protein 17

See identical proteins and their annotated locations for NP_001171682.1

Status: PROVISIONAL

Source sequence(s)

GU475009

UniProtKB/TrEMBL

A0A4X1TT67, A0A8D0ZZX0, A0A8D1NTL1, D5K8A7

Related

ENSSSCP00000037491.1, ENSSSCT00000058023.3

Conserved Domains (1) summary

cl27381
Location:53 → 173

Myosin_head; Myosin head (motor domain)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

NC_010452.4 Reference Sscrofa11.1 Primary Assembly

Range

7797448..8120892

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021063977.1 → XP_020919636.1 spermatogenesis-associated protein 17 isoform X1

UniProtKB/TrEMBL

A0A4X1TT67, A0A8D0ZZX0, A0A8D1NTL1, D5K8A7

Conserved Domains (1) summary

cl27381
Location:53 → 173

Myosin_head; Myosin head (motor domain)