U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LGI4 leucine rich repeat LGI family member 4 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100415697, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
LGI4
Gene description
leucine rich repeat LGI family member 4
See related
Ensembl:ENSCJAG00000010603
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LGI4 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (30001404..30020190, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (31402390..31421178, complement)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118150256 Neighboring gene FXYD domain containing ion transport regulator 3 Neighboring gene FXYD domain containing ion transport regulator 1 Neighboring gene FXYD domain containing ion transport regulator 7 Neighboring gene FXYD domain containing ion transport regulator 5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in myelination in peripheral nervous system IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
leucine-rich repeat LGI family member 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    30001404..30020190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035286362.2 → XP_035142253.1  leucine-rich repeat LGI family member 4 isoform X1

    UniProtKB/TrEMBL
    F6Q122, U3BGF6
    Conserved Domains (5) summary
    TIGR00864
    Location:132 → 207
    PCC; polycystin cation channel protein
    sd00031
    Location:55 → 78
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:168 → 206
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:397 → 437
    EPTP; EPTP domain
    pfam13855
    Location:77 → 137
    LRR_8; Leucine rich repeat

  2. XM_054250275.1 → XP_054106250.1  leucine-rich repeat LGI family member 4 isoform X1

    UniProtKB/TrEMBL
    F6Q122, U3BGF6

  3. XM_054250277.1 → XP_054106252.1  leucine-rich repeat LGI family member 4 isoform X3

  4. XM_054250276.1 → XP_054106251.1  leucine-rich repeat LGI family member 4 isoform X2

  5. XM_002762008.5 → XP_002762054.1  leucine-rich repeat LGI family member 4 isoform X1

    See identical proteins and their annotated locations for XP_002762054.1

    UniProtKB/TrEMBL
    F6Q122, U3BGF6
    Related
    ENSCJAP00000019573.2
    Conserved Domains (5) summary
    TIGR00864
    Location:132 → 207
    PCC; polycystin cation channel protein
    sd00031
    Location:55 → 78
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:168 → 206
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:397 → 437
    EPTP; EPTP domain
    pfam13855
    Location:77 → 137
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.