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CLDN6 claudin 6 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100413356, updated on 8-Mar-2024

Summary

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Gene symbol
CLDN6
Gene description
claudin 6
See related
Ensembl:ENSCJAG00000023120
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 12 NC_071453.1 (2898936..2904387, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 12 NC_048394.1 (2942102..2946633, complement)

Chromosome 12 - NC_071453.1Genomic Context describing neighboring genes Neighboring gene protein kinase, membrane associated tyrosine/threonine 1 Neighboring gene glycine rich extracellular protein 1 Neighboring gene claudin 9 Neighboring gene TNF receptor superfamily member 12A Neighboring gene host cell factor C1 regulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071453.1 Reference mCalJa1.2.pat.X

    Range
    2898936..2904387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017978662.3 → XP_017834151.1  claudin-6

    UniProtKB/TrEMBL
    U3E0Z7
    Related
    ENSCJAP00000041648.1
    Conserved Domains (1) summary
    cl21598
    Location:5 → 165
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
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Gene LinkOut

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