U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ABCB9 ATP binding cassette subfamily B member 9 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100409526, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ABCB9
Gene description
ATP binding cassette subfamily B member 9
See related
Ensembl:ENSCJAG00000016428
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ABCB9 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (122563086..122605951, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (123622913..123665775, complement)

Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein Sm D2-like Neighboring gene uncharacterized LOC100413103 Neighboring gene 2-oxoglutarate and iron dependent oxygenase domain containing 2 Neighboring gene ADP ribosylation factor like GTPase 6 interacting protein 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type oligopeptide transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptide transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ABC-type oligopeptide transporter ABCB9
Names
ATP-binding cassette sub-family B member 9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071450.1 Reference mCalJa1.2.pat.X

    Range
    122563086..122605951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035258042.2 → XP_035113933.1  ABC-type oligopeptide transporter ABCB9 isoform X1

    UniProtKB/TrEMBL
    U3BKA1, U3E6C0
    Conserved Domains (1) summary
    TIGR00958
    Location:19 → 738
    3a01208; Conjugate Transporter-2 (CT2) Family protein

  2. XM_035258045.2 → XP_035113936.1  ABC-type oligopeptide transporter ABCB9 isoform X4

    UniProtKB/TrEMBL
    U3BKA1
    Conserved Domains (1) summary
    TIGR00958
    Location:19 → 639
    3a01208; Conjugate Transporter-2 (CT2) Family protein

  3. XM_035258046.2 → XP_035113937.1  ABC-type oligopeptide transporter ABCB9 isoform X5

    UniProtKB/TrEMBL
    F7AQV5, U3CP75
    Conserved Domains (1) summary
    TIGR00958
    Location:19 → 617
    3a01208; Conjugate Transporter-2 (CT2) Family protein

  4. XM_009004842.4 → XP_009003090.1  ABC-type oligopeptide transporter ABCB9 isoform X3

    UniProtKB/TrEMBL
    U3BKA1
    Conserved Domains (2) summary
    pfam00664
    Location:193 → 455
    ABC_membrane; ABC transporter transmembrane region
    cl21455
    Location:493 → 635
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  5. XM_035258043.2 → XP_035113934.1  ABC-type oligopeptide transporter ABCB9 isoform X2

    UniProtKB/TrEMBL
    U3BKA1
    Conserved Domains (1) summary
    TIGR00958
    Location:19 → 695
    3a01208; Conjugate Transporter-2 (CT2) Family protein

  6. XM_009004839.4 → XP_009003087.1  ABC-type oligopeptide transporter ABCB9 isoform X1

    See identical proteins and their annotated locations for XP_009003087.1

    UniProtKB/TrEMBL
    U3BKA1, U3E6C0
    Related
    ENSCJAP00000030284.2
    Conserved Domains (1) summary
    TIGR00958
    Location:19 → 738
    3a01208; Conjugate Transporter-2 (CT2) Family protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.