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CRISPLD1 cysteine rich secretory protein LCCL domain containing 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100408844, updated on 8-Mar-2024

Summary

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Gene symbol
CRISPLD1
Gene description
cysteine rich secretory protein LCCL domain containing 1
See related
Ensembl:ENSCJAG00000000549
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 16 NC_071457.1 (49583771..49632366, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 16 NC_048398.1 (49689239..49737845, complement)

Chromosome 16 - NC_071457.1Genomic Context describing neighboring genes Neighboring gene cytochrome b-c1 complex subunit Rieske, mitochondrial-like Neighboring gene chromatin complexes subunit BAP18-like Neighboring gene peptidase inhibitor 15 Neighboring gene uncharacterized LOC118148571

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine-rich secretory protein LCCL domain-containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071457.1 Reference mCalJa1.2.pat.X

    Range
    49583771..49632366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035276761.1 → XP_035132652.1  cysteine-rich secretory protein LCCL domain-containing 1 isoform X1

    UniProtKB/TrEMBL
    F6RQY9, F6RR05, U3C2B5
    Conserved Domains (3) summary
    smart00603
    Location:291 → 375
    LCCL; LCCL domain
    pfam03815
    Location:394 → 491
    LCCL; LCCL domain
    cl00133
    Location:62 → 207
    CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family

  2. XM_002759118.5 → XP_002759164.1  cysteine-rich secretory protein LCCL domain-containing 1 isoform X1

    See identical proteins and their annotated locations for XP_002759164.1

    UniProtKB/TrEMBL
    F6RQY9, F6RR05, U3C2B5
    Related
    ENSCJAP00000000955.2
    Conserved Domains (3) summary
    smart00603
    Location:291 → 375
    LCCL; LCCL domain
    pfam03815
    Location:394 → 491
    LCCL; LCCL domain
    cl00133
    Location:62 → 207
    CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family

  3. XM_008982801.2 → XP_008981049.1  cysteine-rich secretory protein LCCL domain-containing 1 isoform X2

    UniProtKB/TrEMBL
    F6RQX6
    Related
    ENSCJAP00000000956.2
    Conserved Domains (2) summary
    smart00603
    Location:105 → 189
    LCCL; LCCL domain
    pfam03815
    Location:208 → 306
    LCCL; LCCL domain
Nucleotide Protein
Heading Accession and Version

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