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LMO2 LIM domain only 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100408080, updated on 8-Mar-2024

Summary

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Gene symbol
LMO2
Gene description
LIM domain only 2
See related
Ensembl:ENSCJAG00000010531
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 11 NC_071452.1 (95963448..95976061, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 11 NC_048393.1 (97165555..97178167, complement)

Chromosome 11 - NC_071452.1Genomic Context describing neighboring genes Neighboring gene sorting nexin-8-like Neighboring gene histone-lysine N-methyltransferase SETMAR-like Neighboring gene uncharacterized LOC118145647 Neighboring gene 5S ribosomal RNA Neighboring gene cell cycle associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhombotin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071452.1 Reference mCalJa1.2.pat.X

    Range
    95963448..95976061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035262333.2 → XP_035118224.1  rhombotin-2 isoform X1

    Conserved Domains (2) summary
    cd09384
    Location:92 → 147
    LIM1_LMO2; The first LIM domain of LMO2 (LIM domain only protein 2)
    cd09385
    Location:156 → 211
    LIM2_LMO2; The second LIM domain of LMO2 (LIM domain only protein 2)

  2. XM_035262334.2 → XP_035118225.1  rhombotin-2 isoform X2

    Conserved Domains (2) summary
    cd09384
    Location:30 → 85
    LIM1_LMO2; The first LIM domain of LMO2 (LIM domain only protein 2)
    cd09385
    Location:94 → 149
    LIM2_LMO2; The second LIM domain of LMO2 (LIM domain only protein 2)

  3. XM_054240746.1 → XP_054096721.1  rhombotin-2 isoform X1

Nucleotide Protein
Heading Accession and Version

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