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SLC1A6 solute carrier family 1 member 6 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100404384, updated on 8-Mar-2024

Summary

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Gene symbol
SLC1A6
Gene description
solute carrier family 1 member 6
See related
Ensembl:ENSCJAG00000004498
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (13194371..13222444, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (13272262..13298623, complement)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 7A10 Neighboring gene olfactory receptor 7C2 Neighboring gene tektin like 1 Neighboring gene caspase 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-glutamate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neutral L-amino acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-glutamate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
excitatory amino acid transporter 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    13194371..13222444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035284480.2 → XP_035140371.1  excitatory amino acid transporter 4

    UniProtKB/TrEMBL
    F7IHZ7, F7IPY8, U3EGZ4
    Conserved Domains (1) summary
    pfam00375
    Location:58 → 522
    SDF; Sodium:dicarboxylate symporter family

  2. XM_035284481.2 → XP_035140372.1  excitatory amino acid transporter 4

    UniProtKB/TrEMBL
    F7IHZ7, F7IPY8, U3EGZ4
    Conserved Domains (1) summary
    pfam00375
    Location:58 → 522
    SDF; Sodium:dicarboxylate symporter family
Nucleotide Protein
Heading Accession and Version

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