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RTN4 reticulon 4 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100402774, updated on 8-Mar-2024

Summary

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Gene symbol
RTN4
Gene description
reticulon 4
See related
Ensembl:ENSCJAG00000010079
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See RTN4 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 14 NC_071455.1 (57179638..57371332)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 14 NC_048396.1 (56147830..56337953)

Chromosome 14 - NC_071455.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100894535 Neighboring gene uncharacterized protein C2orf78-like Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene U5 spliceosomal RNA Neighboring gene nicotinamide phosphoribosyltransferase-like Neighboring gene actin-related protein 2/3 complex subunit 5-like protein Neighboring gene uncharacterized LOC103787944 Neighboring gene U6 spliceosomal RNA Neighboring gene thymosin beta-4-like Neighboring gene EMAP like 6 Neighboring gene U7 small nuclear RNA Neighboring gene spectrin beta, non-erythrocytic 1 Neighboring gene uncharacterized protein C9orf85-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum tubular network formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
reticulon-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071455.1 Reference mCalJa1.2.pat.X

    Range
    57179638..57371332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035272573.2 → XP_035128464.1  reticulon-4 isoform X2

    UniProtKB/TrEMBL
    A0A8I3XC77, U3F9N8
    Conserved Domains (1) summary
    pfam02453
    Location:800 → 964
    Reticulon

  2. XM_008980699.4 → XP_008978947.2  reticulon-4 isoform X1

    UniProtKB/TrEMBL
    F7ICF0, U3F9N8
    Conserved Domains (1) summary
    pfam02453
    Location:1007 → 1171
    Reticulon

  3. XM_008980700.4 → XP_008978948.2  reticulon-4 isoform X1

    UniProtKB/TrEMBL
    F7ICF0, U3F9N8
    Conserved Domains (1) summary
    pfam02453
    Location:1007 → 1171
    Reticulon

  4. XM_054245307.1 → XP_054101282.1  reticulon-4 isoform X3

  5. XM_008980702.3 → XP_008978950.1  reticulon-4 isoform X4

    See identical proteins and their annotated locations for XP_008978950.1

    UniProtKB/TrEMBL
    U3FV09
    Conserved Domains (2) summary
    pfam02453
    Location:186 → 350
    Reticulon; Reticulon
    cl26247
    Location:88 → 128
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  6. XM_008980703.3 → XP_008978951.1  reticulon-4 isoform X4

    See identical proteins and their annotated locations for XP_008978951.1

    UniProtKB/TrEMBL
    U3FV09
    Conserved Domains (2) summary
    pfam02453
    Location:186 → 350
    Reticulon; Reticulon
    cl26247
    Location:88 → 128
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  7. XM_035272574.2 → XP_035128465.1  reticulon-4 isoform X2

    UniProtKB/TrEMBL
    A0A8I3XC77, U3F9N8
    Conserved Domains (1) summary
    pfam02453
    Location:800 → 964
    Reticulon

  8. XM_008980704.1 → XP_008978952.1  reticulon-4 isoform X5

    See identical proteins and their annotated locations for XP_008978952.1

    UniProtKB/TrEMBL
    U3DUX1, U3FYH1
    Conserved Domains (1) summary
    pfam02453
    Location:12 → 176
    Reticulon

  9. XM_035272577.1 → XP_035128468.1  reticulon-4 isoform X5

    UniProtKB/TrEMBL
    U3DUX1, U3FYH1
    Conserved Domains (1) summary
    pfam02453
    Location:12 → 176
    Reticulon
Nucleotide Protein
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