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RNF170 ring finger protein 170 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100402404, updated on 8-Mar-2024

Summary

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Gene symbol
RNF170
Gene description
ring finger protein 170
See related
Ensembl:ENSCJAG00000003476
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See RNF170 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 13 NC_071454.1 (41487380..41529503, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 13 NC_048395.1 (41564578..41609313, complement)

Chromosome 13 - NC_071454.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128929448 Neighboring gene THAP domain containing 1 Neighboring gene U4 spliceosomal RNA Neighboring gene U4 spliceosomal RNA Neighboring gene hook microtubule tethering protein 3 Neighboring gene NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF170

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071454.1 Reference mCalJa1.2.pat.X

    Range
    41487380..41529503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017963829.3 → XP_017819318.1  E3 ubiquitin-protein ligase RNF170 isoform X1

    UniProtKB/TrEMBL
    F7F4R2, U3CM22
    Related
    ENSCJAP00000006325.2
    Conserved Domains (2) summary
    cd16553
    Location:87 → 130
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:203 → 239
    DUF1232; Protein of unknown function (DUF1232)

  2. XM_035270456.2 → XP_035126347.1  E3 ubiquitin-protein ligase RNF170 isoform X1

    UniProtKB/TrEMBL
    F7F4R2, U3CM22
    Conserved Domains (2) summary
    cd16553
    Location:87 → 130
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:203 → 239
    DUF1232; Protein of unknown function (DUF1232)

  3. XM_008979417.4 → XP_008977665.1  E3 ubiquitin-protein ligase RNF170 isoform X2

    Conserved Domains (2) summary
    cd16553
    Location:3 → 46
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:119 → 155
    DUF1232; Protein of unknown function (DUF1232)

  4. XM_054243916.1 → XP_054099891.1  E3 ubiquitin-protein ligase RNF170 isoform X2

Nucleotide Protein
Heading Accession and Version

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