U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ZYX zyxin [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100401398, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ZYX
Gene description
zyxin
See related
Ensembl:ENSCJAG00000009741
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 8 NC_071449.1 (101394351..101404525, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 8 NC_048390.1 (102211857..102222035, complement)

Chromosome 8 - NC_071449.1Genomic Context describing neighboring genes Neighboring gene taste receptor type 2 member 62 Neighboring gene EPH receptor A1 Neighboring gene family with sequence similarity 131 member B Neighboring gene chloride voltage-gated channel 1 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zyxin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071449.1 Reference mCalJa1.2.pat.X

    Range
    101394351..101404525 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035254520.2 → XP_035110411.1  zyxin isoform X3

    UniProtKB/TrEMBL
    A0A8I4A2D1
    Conserved Domains (4) summary
    cd09353
    Location:471 → 530
    LIM2_Zyxin; The second LIM domain of Zyxin
    cd09435
    Location:531 → 597
    LIM3_Zyxin; The third LIM domain of Zyxin
    PHA03247
    Location:23 → 417
    PHA03247; large tegument protein UL36; Provisional
    cl02475
    Location:378 → 464
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  2. XM_035254519.2 → XP_035110410.1  zyxin isoform X2

    UniProtKB/TrEMBL
    A0A8I4A2D1, A0A8J8Y2F7
    Conserved Domains (4) summary
    cd09349
    Location:408 → 494
    LIM1_Zyxin; The first LIM domain of Zyxin
    cd09353
    Location:501 → 560
    LIM2_Zyxin; The second LIM domain of Zyxin
    cd09435
    Location:561 → 627
    LIM3_Zyxin; The third LIM domain of Zyxin
    PHA03247
    Location:42 → 447
    PHA03247; large tegument protein UL36; Provisional

  3. XM_035254518.2 → XP_035110409.1  zyxin isoform X1

    UniProtKB/TrEMBL
    A0A8I4A2D1
    Conserved Domains (4) summary
    cd09349
    Location:409 → 495
    LIM1_Zyxin; The first LIM domain of Zyxin
    cd09353
    Location:502 → 561
    LIM2_Zyxin; The second LIM domain of Zyxin
    cd09435
    Location:562 → 628
    LIM3_Zyxin; The third LIM domain of Zyxin
    PHA03247
    Location:53 → 448
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.