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RAPGEF3 Rap guanine nucleotide exchange factor 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100399583, updated on 3-Apr-2024

Summary

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Gene symbol
RAPGEF3
Gene description
Rap guanine nucleotide exchange factor 3
See related
Ensembl:ENSCJAG00000014874
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (113227..137905, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (56253..80940, complement)

Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118144061 Neighboring gene uridylate-specific endoribonuclease Neighboring gene solute carrier family 48 member 1 Neighboring gene uncharacterized LOC118144062 Neighboring gene histone deacetylase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Ras protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rap guanine nucleotide exchange factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071450.1 Reference mCalJa1.2.pat.X

    Range
    113227..137905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054237894.1 → XP_054093869.1  rap guanine nucleotide exchange factor 3 isoform X2

  2. XM_009003210.4 → XP_009001458.3  rap guanine nucleotide exchange factor 3 isoform X1

  3. XM_002752088.6 → XP_002752134.4  rap guanine nucleotide exchange factor 3 isoform X3

    UniProtKB/TrEMBL
    F7FED2, U3BPM1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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