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KDELR2 KDEL endoplasmic reticulum protein retention receptor 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100398653, updated on 8-Mar-2024

Summary

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Gene symbol
KDELR2
Gene description
KDEL endoplasmic reticulum protein retention receptor 2
See related
Ensembl:ENSCJAG00000015474
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 2 NC_071443.1 (14245631..14267174, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 2 NC_048384.1 (14559551..14581080, complement)

Chromosome 2 - NC_071443.1Genomic Context describing neighboring genes Neighboring gene Rac family small GTPase 1 Neighboring gene U4 spliceosomal RNA Neighboring gene diacylglycerol lipase beta Neighboring gene Grid2 interacting protein Neighboring gene zinc finger DHHC-type palmitoyltransferase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ER retention sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein retention in ER lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cis-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ER lumen protein-retaining receptor 2
Names
ER lumen protein retaining receptor 2
KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071443.1 Reference mCalJa1.2.pat.X

    Range
    14245631..14267174 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002744068.6 → XP_002744114.1  ER lumen protein-retaining receptor 2 isoform X1

    See identical proteins and their annotated locations for XP_002744114.1

    UniProtKB/TrEMBL
    A0A2R8P6P7, F7BPN6
    Related
    ENSCJAP00000028510.2
    Conserved Domains (1) summary
    pfam00810
    Location:28 → 169
    ER_lumen_recept; ER lumen protein retaining receptor

  2. XM_008983571.4 → XP_008981819.1  ER lumen protein-retaining receptor 2 isoform X2

    UniProtKB/TrEMBL
    A0A5F4W9W6
    Related
    ENSCJAP00000049331.1
    Conserved Domains (1) summary
    pfam00810
    Location:28 → 114
    ER_lumen_recept; ER lumen protein retaining receptor
Nucleotide Protein
Heading Accession and Version

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