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Kdelr2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 [ Mus musculus (house mouse) ]

Gene ID: 66913, updated on 2-Jun-2019

Summary

Official Symbol
Kdelr2provided by MGI
Official Full Name
KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2provided by MGI
Primary source
MGI:MGI:1914163
See related
Ensembl:ENSMUSG00000079111
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110007A14Rik
Expression
Ubiquitous expression in duodenum adult (RPKM 116.2), colon adult (RPKM 108.7) and 28 other tissues See more
Orthologs

Genomic context

See Kdelr2 in Genome Data Viewer
Location:
5; 5 G2
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (143403820..143421904)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (144165499..144182955)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1 Neighboring gene predicted gene, 38736 Neighboring gene predicted gene 20635 Neighboring gene cyclin B1 pseudogene Neighboring gene predicted gene 9497

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ER retention sequence binding IEA
Inferred from Electronic Annotation
more info
 
KDEL sequence binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
ER to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein retention in ER lumen IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein transport IEA
Inferred from Electronic Annotation
more info
 
retrograde vesicle-mediated transport, Golgi to ER ISO
Inferred from Sequence Orthology
more info
 
vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
colocalizes_with COPI-coated vesicle membrane ISO
Inferred from Sequence Orthology
more info
 
Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi membrane ISO
Inferred from Sequence Orthology
more info
 
cis-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cis-Golgi network ISO
Inferred from Sequence Orthology
more info
PubMed 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
PubMed 
endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ER lumen protein-retaining receptor 2
Names
KDEL endoplasmic reticulum protein retention receptor 2
KDEL receptor 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025841.4NP_080117.1  ER lumen protein-retaining receptor 2

    See identical proteins and their annotated locations for NP_080117.1

    Status: VALIDATED

    Source sequence(s)
    AA823141, AK150402, CJ173962
    Consensus CDS
    CCDS39369.1
    UniProtKB/Swiss-Prot
    Q9CQM2
    Related
    ENSMUSP00000106359.2, ENSMUST00000110731.3
    Conserved Domains (1) summary
    pfam00810
    Location:28169
    ER_lumen_recept; ER lumen protein retaining receptor

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

    Range
    143403820..143421904
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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