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CRTAP cartilage associated protein [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100394208, updated on 8-Mar-2024

Summary

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Gene symbol
CRTAP
Gene description
cartilage associated protein
See related
Ensembl:ENSCJAG00000011966
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See CRTAP in Genome Data Viewer
Location:
chromosome: 17
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 17 NC_071458.1 (64343842..64378423)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 17 NC_048399.1 (64505854..64539982)

Chromosome 17 - NC_071458.1Genomic Context describing neighboring genes Neighboring gene cell division cycle protein 20 homolog Neighboring gene C-C motif chemokine receptor 4 Neighboring gene galactosidase beta 1 Neighboring gene transmembrane protein with metallophosphoesterase domain Neighboring gene sushi domain containing 5 Neighboring gene septin-7-like Neighboring gene F-box and leucine rich repeat protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables collagen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen fibril organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-proline hydroxylation to 3-hydroxy-L-proline IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cartilage-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071458.1 Reference mCalJa1.2.pat.X

    Range
    64343842..64378423
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017965930.3 → XP_017821419.1  cartilage-associated protein

    UniProtKB/TrEMBL
    F6SQU1, F6SQX0, U3EGR3
    Related
    ENSCJAP00000021991.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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