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USP47 ubiquitin specific peptidase 47 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100393344, updated on 8-Mar-2024

Summary

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Gene symbol
USP47
Gene description
ubiquitin specific peptidase 47
See related
Ensembl:ENSCJAG00000010537
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See USP47 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 11 NC_071452.1 (74424294..74570774)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 11 NC_048393.1 (75611939..75752138)

Chromosome 11 - NC_071452.1Genomic Context describing neighboring genes Neighboring gene non-histone chromosomal protein HMG-14-like Neighboring gene polypeptide N-acetylgalactosaminyltransferase 18 Neighboring gene dickkopf WNT signaling pathway inhibitor 3 Neighboring gene uncharacterized LOC118145822

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071452.1 Reference mCalJa1.2.pat.X

    Range
    74424294..74570774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009007669.3 → XP_009005917.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X1

    UniProtKB/TrEMBL
    F6RJ93, F7I5L2
    Related
    ENSCJAP00000019528.2
    Conserved Domains (2) summary
    cd02659
    Location:186 → 566
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:187 → 561
    UCH; Ubiquitin carboxyl-terminal hydrolase

  2. XM_009007670.4 → XP_009005918.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X2

    UniProtKB/TrEMBL
    A0A8I3WJT8, F7I5L2
    Conserved Domains (2) summary
    cd02659
    Location:166 → 546
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:167 → 541
    UCH; Ubiquitin carboxyl-terminal hydrolase

  3. XM_002755054.6 → XP_002755100.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X5

    See identical proteins and their annotated locations for XP_002755100.1

    UniProtKB/TrEMBL
    F6RI58, F7I5L2, U3CFT3
    Related
    ENSCJAP00000043467.1
    Conserved Domains (1) summary
    cd02659
    Location:98 → 478
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  4. XM_035265784.2 → XP_035121675.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X3

    UniProtKB/TrEMBL
    A0A2R8MDU9, F7I5L2
    Conserved Domains (2) summary
    cd02659
    Location:157 → 537
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    NF033609
    Location:799 → 996
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

  5. XM_035265783.2 → XP_035121674.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X3

    UniProtKB/TrEMBL
    A0A2R8MDU9, F7I5L2
    Conserved Domains (2) summary
    cd02659
    Location:157 → 537
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    NF033609
    Location:799 → 996
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

  6. XM_017977912.4 → XP_017833401.2  ubiquitin carboxyl-terminal hydrolase 47 isoform X4

    UniProtKB/TrEMBL
    F7I5L2
    Conserved Domains (2) summary
    cd02659
    Location:126 → 506
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    NF033609
    Location:768 → 965
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
Nucleotide Protein
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