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GTF2E2 general transcription factor IIE subunit 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100393218, updated on 8-Mar-2024

Summary

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Gene symbol
GTF2E2
Gene description
general transcription factor IIE subunit 2
See related
Ensembl:ENSCJAG00000012399
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See GTF2E2 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 13 NC_071454.1 (28610437..28689088, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 13 NC_048395.1 (28686518..28765170, complement)

Chromosome 13 - NC_071454.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L38-like Neighboring gene uncharacterized LOC118146781 Neighboring gene RNA binding protein, mRNA processing factor Neighboring gene U5 spliceosomal RNA Neighboring gene small integral membrane protein 18 Neighboring gene prohibitin 1-like Neighboring gene glutathione-disulfide reductase Neighboring gene UBX domain protein 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor IIE subunit beta
Names
general transcription factor IIE, polypeptide 2, beta 34kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071454.1 Reference mCalJa1.2.pat.X

    Range
    28610437..28689088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002756920.4 → XP_002756966.1  transcription initiation factor IIE subunit beta

    See identical proteins and their annotated locations for XP_002756966.1

    UniProtKB/TrEMBL
    F7IFJ1, U3B951
    Related
    ENSCJAP00000022714.2
    Conserved Domains (1) summary
    cd07977
    Location:68 → 146
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
Nucleotide Protein
Heading Accession and Version

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