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FDPS farnesyl diphosphate synthase [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100392642, updated on 6-Jun-2024

Summary

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Gene symbol
FDPS
Gene description
farnesyl diphosphate synthase
See related
Ensembl:ENSCJAG00000008364
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
RUSC1
Orthologs
human mouse all
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Genomic context

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See FDPS in Genome Data Viewer
Location:
chromosome: 18
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 18 NC_071459.1 (9300085..9314474)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 18 NC_048400.1 (9308564..9322915)

Chromosome 18 - NC_071459.1Genomic Context describing neighboring genes Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3 Neighboring gene putative uncharacterized protein RUSC1-AS1 Neighboring gene pyruvate kinase L/R Neighboring gene RUN and SH3 domain containing 1 Neighboring gene U6 spliceosomal RNA Neighboring gene ASH1 like histone lysine methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables geranyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
farnesyl pyrophosphate synthase
Names
RUN and SH3 domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071459.1 Reference mCalJa1.2.pat.X

    Range
    9300085..9314474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035280366.2 → XP_035136257.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    B0CM97
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  2. XM_035280362.2 → XP_035136253.1  farnesyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    B0CM97, F7GUQ3
    Conserved Domains (1) summary
    pfam00348
    Location:108 → 374
    polyprenyl_synt; Polyprenyl synthetase

  3. XM_035280365.2 → XP_035136256.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    B0CM97
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  4. XM_054247567.1 → XP_054103542.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    B0CM97

  5. XM_035280367.2 → XP_035136258.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    B0CM97
    Conserved Domains (1) summary
    pfam00348
    Location:42 → 308
    polyprenyl_synt; Polyprenyl synthetase

  6. XM_054247571.1 → XP_054103546.1  farnesyl pyrophosphate synthase isoform X5

  7. XM_035280364.2 → XP_035136255.1  farnesyl pyrophosphate synthase isoform X1

    UniProtKB/TrEMBL
    B0CM97, F7GUQ3
    Conserved Domains (1) summary
    pfam00348
    Location:108 → 374
    polyprenyl_synt; Polyprenyl synthetase

  8. XM_054247568.1 → XP_054103543.1  farnesyl pyrophosphate synthase isoform X2

    UniProtKB/TrEMBL
    B0CM97

  9. XM_054247569.1 → XP_054103544.1  farnesyl pyrophosphate synthase isoform X3

    UniProtKB/TrEMBL
    B0CM97

  10. XM_054247570.1 → XP_054103545.1  farnesyl pyrophosphate synthase isoform X4

Nucleotide Protein
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