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ZNF598 zinc finger protein 598, E3 ubiquitin ligase [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100391746, updated on 6-Jun-2024

Summary

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Gene symbol
ZNF598
Gene description
zinc finger protein 598, E3 ubiquitin ligase
See related
Ensembl:ENSCJAG00000015194
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ZNF598 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 12 NC_071453.1 (2463546..2474416)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 12 NC_048394.1 (2524180..2535060)

Chromosome 12 - NC_071453.1Genomic Context describing neighboring genes Neighboring gene NHERF family PDZ scaffold protein 2 Neighboring gene neuropeptide W Neighboring gene synaptogyrin 3 Neighboring gene growth factor, augmenter of liver regeneration Neighboring gene NADPH oxidase organizer 1 Neighboring gene transducin beta like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rescue of stalled ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase ZNF598

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071453.1 Reference mCalJa1.2.pat.X

    Range
    2463546..2474416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035266599.2 → XP_035122490.2  E3 ubiquitin-protein ligase ZNF598 isoform X1

    UniProtKB/TrEMBL
    F6WB09

  2. XM_017978642.3 → XP_017834131.3  E3 ubiquitin-protein ligase ZNF598 isoform X2

    UniProtKB/TrEMBL
    F6WB09

  3. XM_035266600.2 → XP_035122491.2  E3 ubiquitin-protein ligase ZNF598 isoform X3

    UniProtKB/TrEMBL
    F6WB09
Nucleotide Protein
Heading Accession and Version

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