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TLR1 toll like receptor 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100390958, updated on 8-Mar-2024

Summary

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Gene symbol
TLR1
Gene description
toll like receptor 1
See related
Ensembl:ENSCJAG00000000831
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See TLR1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 3 NC_071444.1 (151170556..151175532)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 3 NC_048385.1 (153745545..153758042)

Chromosome 3 - NC_071444.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 156 Neighboring gene family with sequence similarity 114 member A1 Neighboring gene toll like receptor 6 Neighboring gene toll like receptor 10 Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Toll-like receptor 2 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to triacyl bacterial lipopeptide IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Toll-like receptor 1-Toll-like receptor 2 protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071444.1 Reference mCalJa1.2.pat.X

    Range
    151170556..151175532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054253431.1 → XP_054109406.1  toll-like receptor 1

    UniProtKB/TrEMBL
    F6X7G7

  2. XM_017970626.3 → XP_017826115.1  toll-like receptor 1

    UniProtKB/TrEMBL
    F6X7G7
    Conserved Domains (7) summary
    smart00082
    Location:524 → 577
    LRRCT; Leucine rich repeat C-terminal domain
    smart00255
    Location:636 → 779
    TIR; Toll - interleukin 1 - resistance
    sd00031
    Location:47 → 70
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:352 → 373
    LRR_RI; leucine-rich repeat [structural motif]
    NF033187
    Location:42 → 257
    internalin_J; class 1 internalin InlJ
    NF033189
    Location:297 → 524
    internalin_A; class 1 internalin InlA
    pfam13855
    Location:69 → 124
    LRR_8; Leucine rich repeat

  3. XM_054253432.1 → XP_054109407.1  toll-like receptor 1

    UniProtKB/TrEMBL
    F6X7G7
Nucleotide Protein
Heading Accession and Version

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