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ARHGAP21 Rho GTPase activating protein 21 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100390028, updated on 6-Jun-2024

Summary

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Gene symbol
ARHGAP21
Gene description
Rho GTPase activating protein 21
See related
Ensembl:ENSCJAG00000007642
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ARHGAP21 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 7 NC_071448.1 (23205513..23335212, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 7 NC_048389.1 (23643097..23774095, complement)

Chromosome 7 - NC_071448.1Genomic Context describing neighboring genes Neighboring gene KIAA1217 ortholog Neighboring gene cystatin-B-like Neighboring gene uncharacterized LOC118143166 Neighboring gene uncharacterized LOC118143199 Neighboring gene uncharacterized LOC128932549 Neighboring gene phosphoribosyl transferase domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rho GTPase-activating protein 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071448.1 Reference mCalJa1.2.pat.X

    Range
    23205513..23335212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035306963.2 → XP_035162854.1  rho GTPase-activating protein 21 isoform X6

    UniProtKB/TrEMBL
    A0A8I4A0Q8
    Conserved Domains (3) summary
    cd00992
    Location:4 → 57
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd04395
    Location:1046 → 1241
    RhoGAP_ARHGAP21; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction ...
    cd01253
    Location:835 → 944
    PH_ARHGAP21-like; ARHGAP21 and related proteins pleckstrin homology (PH) domain

  2. XM_035306960.2 → XP_035162851.1  rho GTPase-activating protein 21 isoform X4

    UniProtKB/TrEMBL
    A0A8I4A0X0, U3C5Q6
    Conserved Domains (3) summary
    cd00992
    Location:48 → 155
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd04395
    Location:1134 → 1329
    RhoGAP_ARHGAP21; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction ...
    cd01253
    Location:923 → 1032
    PH_ARHGAP21-like; ARHGAP21 and related proteins pleckstrin homology (PH) domain

  3. XM_035306956.2 → XP_035162847.1  rho GTPase-activating protein 21 isoform X2

    UniProtKB/TrEMBL
    A0A2R8M3P4, U3C5Q6
    Conserved Domains (3) summary
    cd00992
    Location:48 → 155
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd04395
    Location:1144 → 1339
    RhoGAP_ARHGAP21; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction ...
    cd01253
    Location:933 → 1042
    PH_ARHGAP21-like; ARHGAP21 and related proteins pleckstrin homology (PH) domain

  4. XM_035306953.1 → XP_035162844.1  rho GTPase-activating protein 21 isoform X1

    UniProtKB/TrEMBL
    U3C5Q6
    Conserved Domains (3) summary
    cd00992
    Location:55 → 162
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd04395
    Location:1151 → 1346
    RhoGAP_ARHGAP21; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction ...
    cd01253
    Location:940 → 1049
    PH_ARHGAP21-like; ARHGAP21 and related proteins pleckstrin homology (PH) domain

  5. XM_035306957.2 → XP_035162848.1  rho GTPase-activating protein 21 isoform X3

    UniProtKB/TrEMBL
    U3C5Q6
    Conserved Domains (3) summary
    cd00992
    Location:55 → 162
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd04395
    Location:1141 → 1336
    RhoGAP_ARHGAP21; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction ...
    cd01253
    Location:930 → 1039
    PH_ARHGAP21-like; ARHGAP21 and related proteins pleckstrin homology (PH) domain

  6. XM_035306962.2 → XP_035162853.2  rho GTPase-activating protein 21 isoform X5

    UniProtKB/TrEMBL
    U3C5Q6

  7. XM_035306964.2 → XP_035162855.1  rho GTPase-activating protein 21 isoform X6

    UniProtKB/TrEMBL
    A0A8I4A0Q8
    Conserved Domains (3) summary
    cd00992
    Location:4 → 57
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd04395
    Location:1046 → 1241
    RhoGAP_ARHGAP21; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction ...
    cd01253
    Location:835 → 944
    PH_ARHGAP21-like; ARHGAP21 and related proteins pleckstrin homology (PH) domain
Nucleotide Protein
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