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SVIP small VCP interacting protein [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100389939, updated on 8-Mar-2024

Summary

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Gene symbol
SVIP
Gene description
small VCP interacting protein
See related
Ensembl:ENSCJAG00000006372
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 11 NC_071452.1 (85270155..85279670, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 11 NC_048393.1 (86453001..86462515, complement)

Chromosome 11 - NC_071452.1Genomic Context describing neighboring genes Neighboring gene FA complementation group F Neighboring gene growth arrest specific 2 Neighboring gene uncharacterized LOC128929160 Neighboring gene coiled-coil domain containing 179 Neighboring gene ribosome production factor 2 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of retrograde protein transport, ER to cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small VCP/p97-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071452.1 Reference mCalJa1.2.pat.X

    Range
    85270155..85279670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002755119.6 → XP_002755165.1  small VCP/p97-interacting protein

    See identical proteins and their annotated locations for XP_002755165.1

    UniProtKB/TrEMBL
    F7GCE0, U3BCM5
    Related
    ENSCJAP00000011746.1
    Conserved Domains (1) summary
    pfam15811
    Location:1 → 73
    SVIP; Small VCP/p97-interacting protein
Nucleotide Protein
Heading Accession and Version

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