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TRMT1 tRNA methyltransferase 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100389881, updated on 8-Mar-2024

Summary

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Gene symbol
TRMT1
Gene description
tRNA methyltransferase 1
See related
Ensembl:ENSCJAG00000004566
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See TRMT1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (11581413..11596240, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (11658976..11673808, complement)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118150248 Neighboring gene nuclear factor I X Neighboring gene LYL1 basic helix-loop-helix family member Neighboring gene nucleus accumbens associated 1 Neighboring gene syntaxin 10 Neighboring gene immediate early response 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA N2-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (guanine(26)-N(2))-dimethyltransferase
Names
TRM1 tRNA methyltransferase 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    11581413..11596240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035287399.2 → XP_035143290.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1

    UniProtKB/TrEMBL
    F7HZ06
    Conserved Domains (2) summary
    smart00356
    Location:637 → 663
    ZnF_C3H1; zinc finger
    pfam02005
    Location:83 → 537
    TRM; N2,N2-dimethylguanosine tRNA methyltransferase

  2. XM_008987384.4 → XP_008985632.2  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X2

    UniProtKB/TrEMBL
    F7HZ06
    Related
    ENSCJAP00000008315.2

  3. XM_054249542.1 → XP_054105517.1  tRNA (guanine(26)-N(2))-dimethyltransferase isoform X3

Nucleotide Protein
Heading Accession and Version

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