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ESR1 estrogen receptor 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100385918, updated on 19-Jun-2024

Summary

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Gene symbol
ESR1
Gene description
estrogen receptor 1
See related
Ensembl:ENSCJAG00000013293
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (154635651..155103990)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (155194756..155663678)

Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 170 Neighboring gene acidic residue methyltransferase 1 Neighboring gene uncharacterized LOC118153025 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC128931846 Neighboring gene lanosterol 14-alpha demethylase-like Neighboring gene spectrin repeat containing nuclear envelope protein 1 Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC128931845 Neighboring gene MYC target 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear estrogen receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in steroid hormone receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
estrogen receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071445.1 Reference mCalJa1.2.pat.X

    Range
    154635651..155103990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035297756.2 → XP_035153647.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4
    Conserved Domains (4) summary
    cd06949
    Location:310 → 547
    NR_LBD_ER; Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)
    cd07171
    Location:180 → 261
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    pfam02159
    Location:42 → 181
    Oest_recep; Oestrogen receptor
    pfam12743
    Location:556 → 595
    ESR1_C; Oestrogen-type nuclear receptor final C-terminal

  2. XM_035297749.2 → XP_035153640.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4
    Conserved Domains (4) summary
    cd06949
    Location:310 → 547
    NR_LBD_ER; Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)
    cd07171
    Location:180 → 261
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    pfam02159
    Location:42 → 181
    Oest_recep; Oestrogen receptor
    pfam12743
    Location:556 → 595
    ESR1_C; Oestrogen-type nuclear receptor final C-terminal

  3. XM_054254529.1 → XP_054110504.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4

  4. XM_054254534.1 → XP_054110509.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4

  5. XM_054254530.1 → XP_054110505.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4

  6. XM_054254531.1 → XP_054110506.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4

  7. XM_054254528.1 → XP_054110503.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4

  8. XM_054254532.1 → XP_054110507.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4

  9. XM_054254536.1 → XP_054110511.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4

  10. XM_054254535.1 → XP_054110510.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4

  11. XM_054254533.1 → XP_054110508.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4

  12. XM_035297755.2 → XP_035153646.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4
    Conserved Domains (4) summary
    cd06949
    Location:310 → 547
    NR_LBD_ER; Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)
    cd07171
    Location:180 → 261
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    pfam02159
    Location:42 → 181
    Oest_recep; Oestrogen receptor
    pfam12743
    Location:556 → 595
    ESR1_C; Oestrogen-type nuclear receptor final C-terminal

  13. XM_054254527.1 → XP_054110502.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4

  14. XM_054254537.1 → XP_054110512.1  estrogen receptor isoform X2

  15. XM_054254538.1 → XP_054110513.1  estrogen receptor isoform X3

  16. XM_035297752.2 → XP_035153643.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4
    Conserved Domains (4) summary
    cd06949
    Location:310 → 547
    NR_LBD_ER; Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)
    cd07171
    Location:180 → 261
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    pfam02159
    Location:42 → 181
    Oest_recep; Oestrogen receptor
    pfam12743
    Location:556 → 595
    ESR1_C; Oestrogen-type nuclear receptor final C-terminal

  17. XM_035297751.2 → XP_035153642.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    F7FPN2, F7HGB4
    Conserved Domains (4) summary
    cd06949
    Location:310 → 547
    NR_LBD_ER; Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)
    cd07171
    Location:180 → 261
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    pfam02159
    Location:42 → 181
    Oest_recep; Oestrogen receptor
    pfam12743
    Location:556 → 595
    ESR1_C; Oestrogen-type nuclear receptor final C-terminal
Nucleotide Protein
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