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tbc1d9b TBC1 domain family member 9B [ Danio rerio (zebrafish) ]

Gene ID: 100332046, updated on 27-Mar-2024

Summary

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Gene symbol
tbc1d9b
Gene description
TBC1 domain family member 9B
See related
Ensembl:ENSDARG00000043627
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
23
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (1364722..1393194)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (1351593..1379750)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene centrin 4 Neighboring gene Bardet-Biedl syndrome 12 Neighboring gene zgc:152774 Neighboring gene phosphoethanolamine methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
TBC1 domain family member 9B
Names
TBC1 domain family, member 9B (with GRAM domain)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    1364722..1393194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009307655.3 → XP_009305930.1  TBC1 domain family member 9B isoform X1

    UniProtKB/TrEMBL
    A0A8M3AZH8, E7F7E8
    Related
    ENSDARP00000078232.5, ENSDART00000083797.6
    Conserved Domains (3) summary
    smart00164
    Location:493 → 703
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cd13354
    Location:300 → 395
    PH-GRAM2_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2
    cd13351
    Location:153 → 251
    PH-GRAM1_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

  2. XM_009307656.3 → XP_009305931.1  TBC1 domain family member 9B isoform X2

    UniProtKB/TrEMBL
    A0A286Y906, A0A8M3B8C9
    Related
    ENSDARP00000143661.2, ENSDART00000176087.2
    Conserved Domains (3) summary
    smart00164
    Location:493 → 703
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cd13354
    Location:300 → 395
    PH-GRAM2_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 2
    cd13351
    Location:153 → 251
    PH-GRAM1_TCB1D9_TCB1D9B; TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1
Nucleotide Protein
Heading Accession and Version

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