U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nlgn3 neuroligin 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100329188, updated on 25-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
nlgn3provided by Xenbase
Official Full Name
neuroligin 3provided by Xenbase
Primary source
Xenbase:XB-GENE-977261
See related
Ensembl:ENSXETG00000020891
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
hnl3
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See nlgn3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (44462039..44514093)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (23262043..23313976)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uncharacterized XB5730431 Neighboring gene mediator complex subunit 12 Neighboring gene uncharacterized XB5730473 Neighboring gene protein kinase C delta type-like Neighboring gene interleukin 2 receptor subunit gamma

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Characterization of the neuroligin gene family expression and evolution in zebrafish. Rissone A, et al. Dev Dyn, 2010 Feb. PMID 20034102

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
neuroligin-3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001171827.1 → NP_001165298.1  neuroligin-3 precursor

    See identical proteins and their annotated locations for NP_001165298.1

    Status: PROVISIONAL

    Source sequence(s)
    GQ489237
    UniProtKB/TrEMBL
    A0A6I8R0Y3, A0A6I8RCY9, A0A6I8SPI2, D2X2K6
    Related
    ENSXETP00000082852.2, ENSXETT00000068050.2
    Conserved Domains (1) summary
    pfam00135
    Location:38 → 578
    COesterase; Carboxylesterase family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    44462039..44514093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012968135.3 → XP_012823589.1  neuroligin-3 isoform X1

    UniProtKB/TrEMBL
    A0A803K1S7, F6RUF9
    Related
    ENSXETP00000114268.1, ENSXETT00000120743.1
    Conserved Domains (2) summary
    COG0657
    Location:195 → 302
    Aes; Acetyl esterase/lipase [Lipid transport and metabolism]
    pfam00135
    Location:31 → 618
    COesterase; Carboxylesterase family

  2. XM_012968133.3 → XP_012823587.1  neuroligin-3 isoform X2

    See identical proteins and their annotated locations for XP_012823587.1

    UniProtKB/TrEMBL
    A0A6I8R0Y3, A0A6I8RCY9, A0A6I8SPI2, D2X2K6
    Related
    ENSXETP00000095057.2, ENSXETT00000075883.2
    Conserved Domains (1) summary
    pfam00135
    Location:38 → 578
    COesterase; Carboxylesterase family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.