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AMFR autocrine motility factor receptor [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100229415, updated on 13-Aug-2024

Summary

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Gene symbol
AMFR
Gene description
autocrine motility factor receptor
See related
Ensembl:ENSTGUG00000006634
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See AMFR in Genome Data Viewer
Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 11 NC_044223.2 (4115816..4144009, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 11 NC_045010.1 (12694382..12722166, complement)

Chromosome 11 - NC_044223.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121470587 Neighboring gene G protein subunit alpha o1 Neighboring gene uncharacterized LOC115496874 Neighboring gene nudix hydrolase 21 Neighboring gene 2-oxoglutarate and iron dependent oxygenase domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K48-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase AMFR

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044223.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    4115816..4144009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030282624.3 → XP_030138484.3  E3 ubiquitin-protein ligase AMFR

    UniProtKB/TrEMBL
    H0Z8D5
    Conserved Domains (4) summary
    COG5243
    Location:75 → 371
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    cd14421
    Location:447 → 487
    CUE_AMFR; CUE domain found in autocrine motility factor receptor (AMFR) and similar proteins
    cd16455
    Location:328 → 371
    RING-H2_AMFR; RING finger, H2 subclass, found in autocrine motility factor receptor (AMFR) and similar proteins
    pfam18442
    Location:564 → 589
    G2BR; E3 gp78 Ube2g2-binding region (G2BR)
Nucleotide Protein
Heading Accession and Version

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