ITPRID2 ITPR interacting domain containing 2 [Pongo abelii (Sumatran orangutan)] - Gene

Summary

Gene symbol: ITPRID2
Gene description: ITPR interacting domain containing 2
Locus tag: CR201_G0050349
See related: Ensembl:ENSPPYG00000012991
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Pongo abelii
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as: SSFA2; DKFZP469G1924
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 11

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2)	11	NC_071996.2 (84488443..84615168)
RS_2023_04	previous assembly	NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1)	2B	NC_071987.1 (81884911..82011640)

Chromosome 11 - NC_071996.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

At-8BJ-061 (e-PCR)
- UniSTS:229421

SSFA2 (e-PCR)
- UniSTS:505485

RH17714 (e-PCR)
- UniSTS:4302

RH69390 (e-PCR)
- UniSTS:10210

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables signaling receptor binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein ITPRID2

Names: ITPR-interacting domain-containing protein 2; Sperm-specific antigen 2 homolog; sperm specific antigen 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001135456.3 → NP_001128928.3 protein ITPRID2 isoform 3

Status: VALIDATED

Description

Transcript Variant: This variant (3) lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (3) has a distinct N-terminus and is shorter than isoform 1.

Source sequence(s)

JAQQLQ020000011

UniProtKB/TrEMBL

A0A2J8RJY2, A0A8I5TYL6

Related

ENSPPYP00000044111.1, ENSPPYT00000048133.1
NM_001374233.2 → NP_001361162.2 protein ITPRID2 isoform 1

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).

Source sequence(s)

JAQQLQ020000011

UniProtKB/TrEMBL

A0A2J8RJW8, H2P813, H2P814
NM_001374234.2 → NP_001361163.2 protein ITPRID2 isoform 2

Status: VALIDATED

Description

Transcript Variant: This variant (2) lacks an exon in the 3' coding region compared to variant 1. This results in a novel 3' coding region and 3' UTR, compared to variant 1. It encodes isoform 2 which is shorter and has a distinct C-terminus, compared to isoform 1.

Source sequence(s)

JAQQLQ020000011

UniProtKB/TrEMBL

A0A2J8RK02, A0A8I5TPB3