LSM14A LSM14A mRNA processing body assembly factor [Pongo abelii (Sumatran orangutan)] - Gene

Summary

Gene symbol: LSM14A
Gene description: LSM14A mRNA processing body assembly factor
Locus tag: CR201_G0049047
See related: Ensembl:ENSPPYG00000009832
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pongo abelii
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as: FAM61A
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 20

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2)	20	NC_072005.2 (39514307..39573856)
RS_2023_04	previous assembly	NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1)	19	NC_072004.1 (45260085..45319618)

Chromosome 20 - NC_072005.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

REN92021 (e-PCR)
- UniSTS:416819

BMON117 (e-PCR), detects polymorphism
- UniSTS:251706

CSAP26E (e-PCR), detects polymorphism
- UniSTS:279628

ECD12271 (e-PCR)
- UniSTS:293304

D19S802 (e-PCR)
- UniSTS:153550

RH93647 (e-PCR)
- UniSTS:91880

RH70420 (e-PCR)
- UniSTS:39669

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables mRNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in P-body assembly	IEA Inferred from Electronic Annotation more info	PubMed
involved_in stress granule assembly	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in P-body	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein LSM14 homolog A

Names: LSM14 protein homolog A; LSM14A, SCD6 homolog A; RNA-associated protein 55A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001133441.1 → NP_001126913.1 protein LSM14 homolog A

See identical proteins and their annotated locations for NP_001126913.1

Status: PROVISIONAL

Source sequence(s)

CR861180

UniProtKB/Swiss-Prot

Q5R4R4

UniProtKB/TrEMBL

A0A0A0MXP6, A0A2J8RQY6, A0A2J8RQZ2

Related

ENSPPYP00000034022.1, ENSPPYT00000058177.1

Conserved Domains (2) summary

cd01736
Location:4 → 77

LSm14_N; Like-Sm protein 14, N-terminal domain

pfam09532
Location:291 → 399

FDF; FDF domain

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

NC_072005.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Range

39514307..39573856

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009232402.4 → XP_009230677.1 protein LSM14 homolog A isoform X1

UniProtKB/TrEMBL

A0A0A0MXP6, A0A2J8RQZ2, A0A6D2Y5J3, A0A8I5TLJ6

Related

ENSPPYP00000032577.1

Conserved Domains (2) summary

cd01736
Location:4 → 77

LSm14_N; Like-Sm protein 14, N-terminal domain

pfam09532
Location:291 → 399

FDF; FDF domain
XM_024236360.3 → XP_024092128.2 protein LSM14 homolog A isoform X2

UniProtKB/TrEMBL

A0A0A0MXP6, A0A2J8RQZ2
XM_054538447.2 → XP_054394422.1 protein LSM14 homolog A isoform X3

UniProtKB/TrEMBL

A0A0A0MXP6, A0A2J8RQZ2, A0A8I5T0R0
XM_054538448.2 → XP_054394423.1 protein LSM14 homolog A isoform X4

UniProtKB/TrEMBL

A0A0A0MXP6, A0A2J8RQZ2
XM_054538449.1 → XP_054394424.1 protein LSM14 homolog A isoform X5