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NUDT13 nudix hydrolase 13 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100172257, updated on 6-Jun-2024

Summary

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Gene symbol
NUDT13
Gene description
nudix hydrolase 13
Locus tag
CR201_G0030251
See related
Ensembl:ENSPPYG00000002346
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 8 NC_071993.2 (70792608..70832784, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 10 NC_071995.1 (66935123..66975449, complement)

Chromosome 8 - NC_071993.2Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S16 Neighboring gene family with sequence similarity 149 member B1 Neighboring gene DnaJ heat shock protein family (Hsp40) member C9 Neighboring gene eukaryotic initiation factor 4A-II-like Neighboring gene ecdysoneless cell cycle regulator Neighboring gene small nucleolar RNA SNORA11 Neighboring gene prolyl 4-hydroxylase subunit alpha 1 Neighboring gene large ribosomal subunit protein uL22-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp468D1423

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAD(P)H pyrophosphatase NUDT13, mitochondrial
Names
nudix (nucleoside diphosphate linked moiety X)-type motif 13
NP_001125355.1
XP_024108762.1
XP_024108764.1
XP_024108766.1
XP_024108768.1
XP_054377449.1
XP_054377450.1
XP_054377451.1
XP_054377452.1
XP_054377454.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001131883.2 → NP_001125355.1  NAD(P)H pyrophosphatase NUDT13, mitochondrial

    See identical proteins and their annotated locations for NP_001125355.1

    Status: PROVISIONAL

    Source sequence(s)
    CR858426
    UniProtKB/TrEMBL
    A0A8I5T288, Q5RC55
    Related
    ENSPPYP00000025271.1, ENSPPYT00000043798.1
    Conserved Domains (3) summary
    pfam09296
    Location:49 → 162
    NUDIX-like; NADH pyrophosphatase-like rudimentary NUDIX domain
    pfam09297
    Location:166 → 195
    zf-NADH-PPase; NADH pyrophosphatase zinc ribbon domain
    cl00447
    Location:200 → 240
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071993.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    70792608..70832784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054521474.2 → XP_054377449.1  NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X3

  2. XM_024252994.3 → XP_024108762.1  NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A2J8U5Q3, H2NAK7
    Related
    ENSPPYP00000002723.3
    Conserved Domains (1) summary
    COG2816
    Location:31 → 343
    NPY1; NADH pyrophosphatase NudC, Nudix superfamily [Nucleotide transport and metabolism]

  3. XM_024252996.3 → XP_024108764.1  NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X2

    Conserved Domains (1) summary
    COG2816
    Location:31 → 298
    NPY1; NADH pyrophosphatase NudC, Nudix superfamily [Nucleotide transport and metabolism]

  4. XM_024252998.3 → XP_024108766.1  NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A2J8U5S5, A0A8I5T8Y1
    Related
    ENSPPYP00000033602.1
    Conserved Domains (3) summary
    pfam09296
    Location:49 → 162
    NUDIX-like; NADH pyrophosphatase-like rudimentary NUDIX domain
    pfam09297
    Location:166 → 195
    zf-NADH-PPase; NADH pyrophosphatase zinc ribbon domain
    cl00447
    Location:198 → 255
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

  5. XM_024253000.3 → XP_024108768.1  NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X8

    UniProtKB/TrEMBL
    A0A2J8U5S4
    Conserved Domains (1) summary
    cd03429
    Location:3 → 147
    NADH_pyrophosphatase; NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for ...

  6. XM_054521476.2 → XP_054377451.1  NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X6

    UniProtKB/TrEMBL
    A0A2J8U5P4

  7. XM_054521479.2 → XP_054377454.1  NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X8

    UniProtKB/TrEMBL
    A0A2J8U5S4

  8. XM_054521477.1 → XP_054377452.1  NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X7

    UniProtKB/TrEMBL
    A0A2J8U5S9

  9. XM_054521475.2 → XP_054377450.1  NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X5

    UniProtKB/TrEMBL
    A0A2J8U5R8, A0A8I5T288
Nucleotide Protein
Heading Accession and Version

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