capn9 calpain 9 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: capn9provided by Xenbase
Official Full Name: calpain 9provided by Xenbase
Primary source: Xenbase:XB-GENE-948345
See related: Ensembl:ENSXETG00000023310
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	5	NC_030681.2 (52967305..53001667, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	5	NC_030681.1 (42279467..42315929, complement)

Chromosome 5 - NC_030681.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info
enables calcium-dependent cysteine-type endopeptidase activity	IEA Inferred from Electronic Annotation more info
enables cysteine-type peptidase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within proteolysis	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: calpain-9

NP_001121483.1

EC 3.4.22.-

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001128011.1 → NP_001121483.1 calpain-9

See identical proteins and their annotated locations for NP_001121483.1

Status: PROVISIONAL

Source sequence(s)

BC166266

UniProtKB/TrEMBL

B2GUG2

Related

ENSXETP00000050369.3, ENSXETT00000050369.5

Conserved Domains (3) summary

cd16192
Location:522 → 691

EFh_PEF_CAPN9; Penta-EF hand, calcium binding motifs, found in calpain-9 (CAPN9)

pfam00648
Location:43 → 335

Peptidase_C2; Calpain family cysteine protease

pfam01067
Location:356 → 491

Calpain_III; Calpain large subunit, domain III