PYGO2 pygopus family PHD finger 2 [Sus scrofa (pig)] - Gene

Summary

Gene symbol: PYGO2
Gene description: pygopus family PHD finger 2
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Ubiquitous expression in ovary (RPKM 44.5), kidney (RPKM 18.3) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	4	NC_010446.5 (94832279..94836548)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	4	NC_010446.4 (103588676..103592946)

Chromosome 4 - NC_010446.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in kidney development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in spermatid nucleus differentiation	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: pygopus homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001185175.1 → NP_001172104.1 pygopus homolog 2

Status: PROVISIONAL

Source sequence(s)

AK236579

UniProtKB/TrEMBL

A0A2L1CD44, A0A4X1W0C7

Conserved Domains (3) summary

cd15636
Location:329 → 382

PHD_PYGO2; PHD finger found in pygopus homolog 2 (PYGO2)

cl25836
Location:195 → 296

Retinal; Retinal protein

cl26464
Location:4 → 298

Atrophin-1; Atrophin-1 family