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LOXL4 lysyl oxidase like 4 [ Sus scrofa (pig) ]

Gene ID: 100157207, updated on 8-Mar-2024

Summary

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Official Symbol
LOXL4provided by VGNC
Official Full Name
lysyl oxidase like 4provided by VGNC
Primary source
VGNC:VGNC:89783
See related
Ensembl:ENSSSCG00000010532
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in subcutaneous adipose (RPKM 3.8), spleen (RPKM 2.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (109571942..109593408, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (118983478..119005160, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106506104 Neighboring gene R3H domain and coiled-coil containing 1 like Neighboring gene pyridine nucleotide-disulphide oxidoreductase domain 2 Neighboring gene HPS1 biogenesis of lysosomal organelles complex 3 subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-lysine 6-oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysyl oxidase homolog 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    109571942..109593408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021074442.1 → XP_020930101.1  lysyl oxidase homolog 4 isoform X1

    UniProtKB/TrEMBL
    F1S8X0
    Conserved Domains (3) summary
    smart00202
    Location:233 → 333
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:97 → 207
    SRCR; Scavenger receptor cysteine-rich domain
    pfam01186
    Location:455 → 654
    Lysyl_oxidase; Lysyl oxidase

  2. XM_021074444.1 → XP_020930103.1  lysyl oxidase homolog 4 isoform X1

    UniProtKB/TrEMBL
    F1S8X0
    Conserved Domains (3) summary
    smart00202
    Location:233 → 333
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:97 → 207
    SRCR; Scavenger receptor cysteine-rich domain
    pfam01186
    Location:455 → 654
    Lysyl_oxidase; Lysyl oxidase

  3. XM_001929152.5 → XP_001929187.2  lysyl oxidase homolog 4 isoform X2

    UniProtKB/TrEMBL
    F1S8X0
    Related
    ENSSSCP00000011221.4, ENSSSCT00000011522.5
    Conserved Domains (3) summary
    smart00202
    Location:232 → 332
    SR; Scavenger receptor Cys-rich
    pfam00530
    Location:97 → 207
    SRCR; Scavenger receptor cysteine-rich domain
    pfam01186
    Location:454 → 653
    Lysyl_oxidase; Lysyl oxidase
Nucleotide Protein
Heading Accession and Version

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