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ZKSCAN4 zinc finger with KRAB and SCAN domains 4 [ Sus scrofa (pig) ]

Gene ID: 100156123, updated on 8-Mar-2024

Summary

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Official Symbol
ZKSCAN4provided by VGNC
Official Full Name
zinc finger with KRAB and SCAN domains 4provided by VGNC
Primary source
VGNC:VGNC:95173
See related
Ensembl:ENSSSCG00000001204
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
ZNF187
Expression
Ubiquitous expression in ovary (RPKM 1.0), lung (RPKM 0.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ZKSCAN4 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (22092465..22105666)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (24036992..24076992)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene zinc finger and SCAN domain containing 9 Neighboring gene NFKB activating protein like Neighboring gene zinc finger and SCAN domain containing 26 Neighboring gene L-serine dehydratase/L-threonine deaminase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein with KRAB and SCAN domains 4
Names
zinc finger protein 187

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    22092465..22105666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021099807.1 → XP_020955466.1  zinc finger protein with KRAB and SCAN domains 4 isoform X1

    UniProtKB/TrEMBL
    A0A8D0P8S4, A0A8D1PUK8, F1S1S1
    Related
    ENSSSCP00000001273.3, ENSSSCT00000001302.5
    Conserved Domains (6) summary
    smart00431
    Location:50 → 161
    SCAN; leucine rich region
    COG5048
    Location:375 → 539
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:379 → 399
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:321 → 343
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:336 → 358
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:221 → 266
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  2. XM_021099808.1 → XP_020955467.1  zinc finger protein with KRAB and SCAN domains 4 isoform X2

    UniProtKB/TrEMBL
    A0A8D0LE46
    Conserved Domains (5) summary
    COG5048
    Location:220 → 384
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:224 → 244
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:166 → 188
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:181 → 203
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:66 → 111
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
Nucleotide Protein
Heading Accession and Version

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