U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

THBS3 thrombospondin 3 [ Sus scrofa (pig) ]

Gene ID: 100155108, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
THBS3provided by VGNC
Official Full Name
thrombospondin 3provided by VGNC
Primary source
VGNC:VGNC:93948
See related
Ensembl:ENSSSCG00000006524
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in subcutaneous adipose (RPKM 17.6), ovary (RPKM 13.6) and 6 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See THBS3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (94612702..94623905)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (103395527..103406721)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene endosomal transmembrane epsin interactor 3 Neighboring gene glucosylceramidase beta 1 Neighboring gene metaxin 1 Neighboring gene uncharacterized LOC106510137 Neighboring gene microRNA mir-92b Neighboring gene mucin 1, cell surface associated

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
thrombospondin-3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    94612702..94623905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013997018.2 → XP_013852472.2  thrombospondin-3

    UniProtKB/TrEMBL
    A0A4X1VZI7, A0A4X1W0S8, A0A5G2R880, F1RGS0
    Related
    ENSSSCP00000073295.2, ENSSSCT00000082327.2
    Conserved Domains (9) summary
    cd00054
    Location:316 → 352
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    sd00001
    Location:528 → 550
    TSP3; TSP3 repeat_short [structural motif]
    sd00002
    Location:551 → 586
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:457 → 491
    TSP3_1C; TSP3 repeat_1C [structural motif]
    cd16079
    Location:227 → 269
    TSP-3cc; Coiled coil region of thrombospondin-3 (TSP-3)
    pfam02412
    Location:551 → 586
    TSP_3; Thrombospondin type 3 repeat
    pfam05735
    Location:741 → 938
    TSP_C; Thrombospondin C-terminal region
    pfam12947
    Location:374 → 407
    EGF_3; EGF domain
    cl22861
    Location:23 → 193
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Miscellaneous