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FUCA2 alpha-L-fucosidase 2 [ Sus scrofa (pig) ]

Gene ID: 100154940, updated on 8-Mar-2024

Summary

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Official Symbol
FUCA2provided by VGNC
Official Full Name
alpha-L-fucosidase 2provided by VGNC
Primary source
VGNC:VGNC:88263
See related
Ensembl:ENSSSCG00000004133
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 42.7), kidney (RPKM 29.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See FUCA2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (21742192..21762901)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (24129407..24150031)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene zinc finger C2HC-type containing 1B Neighboring gene LTV1 ribosome biogenesis factor Neighboring gene phosphatase and actin regulator 2 Neighboring gene peroxisomal biogenesis factor 3 Neighboring gene uncharacterized LOC110256604 Neighboring gene adenosine deaminase tRNA specific 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-fucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycoside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plasma alpha-L-fucosidase
Names
fucosidase, alpha-L- 2, plasma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    21742192..21762901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021072334.1 → XP_020927993.1  plasma alpha-L-fucosidase isoform X1

    UniProtKB/TrEMBL
    A0A4X1VIQ0, A0A5G2R599, A0A8D0NF22, A0A8D1DDN0
    Related
    ENSSSCP00000071494.1, ENSSSCT00000086887.1
    Conserved Domains (2) summary
    smart00812
    Location:22 → 407
    Alpha_L_fucos; Alpha-L-fucosidase
    pfam16757
    Location:370 → 457
    Fucosidase_C; Alpha-L-fucosidase C-terminal domain

  2. XM_021072338.1 → XP_020927997.1  plasma alpha-L-fucosidase isoform X2

    UniProtKB/TrEMBL
    A0A8D1RVR0
    Conserved Domains (2) summary
    smart00812
    Location:15 → 352
    Alpha_L_fucos; Alpha-L-fucosidase
    pfam16757
    Location:315 → 402
    Fucosidase_C; Alpha-L-fucosidase C-terminal domain
Nucleotide Protein
Heading Accession and Version

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