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CNNM1 cyclin and CBS domain divalent metal cation transport mediator 1 [ Sus scrofa (pig) ]

Gene ID: 100154357, updated on 17-Aug-2024

Summary

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Official Symbol
CNNM1provided by VGNC
Official Full Name
cyclin and CBS domain divalent metal cation transport mediator 1provided by VGNC
Primary source
VGNC:VGNC:86827
See related
Ensembl:ENSSSCG00000010536
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in kidney (RPKM 1.6), mixtures (RPKM 0.9) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (110539360..110601721)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (119924966..119987552)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 Neighboring gene heparanase 2 (inactive) Neighboring gene uncharacterized LOC106508431 Neighboring gene uncharacterized LOC106506106 Neighboring gene glutamic-oxaloacetic transaminase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in magnesium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
metal transporter CNNM1
Names
cyclin M1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    110539360..110601721
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021072279.1 → XP_020927938.1  metal transporter CNNM1 isoform X1

    UniProtKB/TrEMBL
    A0A287BT74, A0A4X1U1M2, A0A8D0Y1D9
    Related
    ENSSSCP00000059381.2, ENSSSCT00000050252.3
    Conserved Domains (1) summary
    cl27264
    Location:248 → 550
    CorC_HlyC; Transporter associated domain

  2. XM_005671380.3 → XP_005671437.1  metal transporter CNNM1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1U6W3, A0A8D0Y1D9, F1S8W6
    Related
    ENSSSCP00000011225.5, ENSSSCT00000011526.5
    Conserved Domains (3) summary
    COG0517
    Location:426 → 550
    CBS; CBS domain [Signal transduction mechanisms]
    cd04590
    Location:435 → 550
    CBS_pair_CorC_HlyC_assoc; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in ...
    pfam01595
    Location:234 → 411
    DUF21; Domain of unknown function DUF21

RNA

  1. XR_002338326.1 RNA Sequence

  2. XR_002338327.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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