U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GNB1L G protein subunit beta 1 like [ Sus scrofa (pig) ]

Gene ID: 100153889, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
GNB1Lprovided by VGNC
Official Full Name
G protein subunit beta 1 likeprovided by VGNC
Primary source
VGNC:VGNC:88530
See related
Ensembl:ENSSSCG00000010130
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 14.1), heart (RPKM 12.4) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (51306561..51343040, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (54943213..54979683, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene glycoprotein Ib platelet subunit beta Neighboring gene T-box transcription factor 1 Neighboring gene retrotransposon Gag like 10 Neighboring gene thioredoxin reductase 2 Neighboring gene catechol-O-methyltransferase Neighboring gene ARVCF delta catenin family member

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
guanine nucleotide-binding protein subunit beta-like protein 1
Names
guanine nucleotide binding protein (G protein), beta polypeptide 1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243455.1 → NP_001230384.1  guanine nucleotide-binding protein subunit beta-like protein 1

    Status: VALIDATED

    Source sequence(s)
    AK352109, BP158014, CJ029038
    UniProtKB/TrEMBL
    A0A4X1UT23, A0A8D0HR82, F1RK57
    Related
    ENSSSCP00000010803.2, ENSSSCT00000011091.4
    Conserved Domains (3) summary
    COG2319
    Location:48 → 289
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:139 → 172
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:48 → 289
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    51306561..51343040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005670934.3 → XP_005670991.1  guanine nucleotide-binding protein subunit beta-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A286ZJE5, A0A480JZ84, A0A4X1UT29, A0A8D0HZB0, A0A8D0PP30, A0A8D2AAL7
    Related
    ENSSSCP00000031575.3, ENSSSCT00000044100.3
    Conserved Domains (2) summary
    sd00039
    Location:172 → 205
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:48 → 321
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_021071921.1 → XP_020927580.1  guanine nucleotide-binding protein subunit beta-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A286ZJE5, A0A480JZ84, A0A4X1UT29, A0A8D0HZB0, A0A8D0PP30, A0A8D2AAL7
    Conserved Domains (2) summary
    sd00039
    Location:172 → 205
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:48 → 321
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials