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ACOT6 acyl-CoA thioesterase 6 [ Sus scrofa (pig) ]

Gene ID: 100152868, updated on 8-Mar-2024

Summary

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Official Symbol
ACOT6provided by VGNC
Official Full Name
acyl-CoA thioesterase 6provided by VGNC
Primary source
VGNC:VGNC:107121
See related
Ensembl:ENSSSCG00000002348
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 11.9), liver (RPKM 9.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ACOT6 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (96984547..96990400)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (102742804..102785288, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene acyl-coenzyme A thioesterase 4-like Neighboring gene uncharacterized LOC106507740 Neighboring gene acyl-coenzyme A thioesterase 4 Neighboring gene dynein axonemal light chain 1 Neighboring gene PNMA family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acyl-CoA hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative acyl-coenzyme A thioesterase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    96984547..96990400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001929018.5 → XP_001929053.1  putative acyl-coenzyme A thioesterase 6

    UniProtKB/TrEMBL
    A0A4X1TMR0, A0A8D1AM32, A0A8D1KX42
    Related
    ENSSSCP00000064983.2, ENSSSCT00000071335.2
    Conserved Domains (3) summary
    pfam04775
    Location:17 → 136
    Bile_Hydr_Trans; Acyl-CoA thioester hydrolase/BAAT N-terminal region
    pfam08840
    Location:203 → 412
    BAAT_C; BAAT / Acyl-CoA thioester hydrolase C terminal
    cl21494
    Location:145 → 253
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein
Heading Accession and Version

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