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ankzf1 ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145584, updated on 17-Aug-2024

Summary

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Official Symbol
ankzf1provided by Xenbase
Official Full Name
ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1provided by Xenbase
Primary source
Xenbase:XB-GENE-984263
See related
Ensembl:ENSXETG00000019293
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (83951978..83970449, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (78616572..78637584, complement)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene galactosidase beta 1 like Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene autophagy related 9A Neighboring gene zinc finger, AN1-type domain 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ankyrin repeat and zinc finger domain-containing protein 1
Names
ankyrin repeat and zinc finger domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    83951978..83970449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031892774.1 → XP_031748634.1  ankyrin repeat and zinc finger domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J1ISR2
    Conserved Domains (5) summary
    PTZ00448
    Location:3 → 46
    PTZ00448; hypothetical protein; Provisional
    sd00045
    Location:404 → 447
    ANK; ANK repeat [structural motif]
    pfam18716
    Location:594 → 630
    VATC; Vms1-associating treble clef domain
    pfam18826
    Location:136 → 279
    bVLRF1; bacteroidetes VLRF1 release factor
    cl39094
    Location:397 → 481
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_031892772.1 → XP_031748632.1  ankyrin repeat and zinc finger domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    F7A9G2
    Related
    ENSXETP00000041799.5, ENSXETT00000041799.5
    Conserved Domains (5) summary
    PTZ00448
    Location:7 → 109
    PTZ00448; hypothetical protein; Provisional
    sd00045
    Location:467 → 510
    ANK; ANK repeat [structural motif]
    pfam18716
    Location:657 → 693
    VATC; Vms1-associating treble clef domain
    pfam18826
    Location:199 → 342
    bVLRF1; bacteroidetes VLRF1 release factor
    cl39094
    Location:460 → 544
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_031892773.1 → XP_031748633.1  ankyrin repeat and zinc finger domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J1ISR2
    Conserved Domains (5) summary
    PTZ00448
    Location:3 → 46
    PTZ00448; hypothetical protein; Provisional
    sd00045
    Location:404 → 447
    ANK; ANK repeat [structural motif]
    pfam18716
    Location:594 → 630
    VATC; Vms1-associating treble clef domain
    pfam18826
    Location:136 → 279
    bVLRF1; bacteroidetes VLRF1 release factor
    cl39094
    Location:397 → 481
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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