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oga O-GlcNAcase [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145437, updated on 25-Apr-2024

Summary

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Official Symbol
ogaprovided by Xenbase
Official Full Name
O-GlcNAcaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-1004479
See related
Ensembl:ENSXETG00000014468
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
mgea5
Orthologs
human mouse all
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Genomic context

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See oga in Genome Data Viewer
Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (31243370..31275893)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (22906132..22939490)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116412034 Neighboring gene nucleophosmin/nucleoplasmin 3 Neighboring gene Kv channel interacting protein 2 Neighboring gene uncharacterized LOC116412288 Neighboring gene armadillo like helical domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein O-GlcNAcase
Names
meningioma expressed antigen 5 (hyaluronidase)
NP_001120363.1
XP_031760683.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126891.1 → NP_001120363.1  protein O-GlcNAcase

    See identical proteins and their annotated locations for NP_001120363.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161052
    UniProtKB/TrEMBL
    A0A6I8QSK0, B1H2M0
    Related
    ENSXETP00000072211.2, ENSXETT00000096073.2
    Conserved Domains (1) summary
    pfam07555
    Location:52 → 328
    NAGidase; beta-N-acetylglucosaminidase

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    31243370..31275893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031904823.1 → XP_031760683.1  protein O-GlcNAcase isoform X1

    UniProtKB/TrEMBL
    A0A6I8R844, F6V0P4
    Related
    ENSXETP00000031661.5, ENSXETT00000031661.5
    Conserved Domains (1) summary
    pfam07555
    Location:52 → 328
    NAGidase; beta-N-acetylglucosaminidase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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