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c4h16orf87 chromosome 4 C16orf87 homolog [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145132, updated on 17-Aug-2024

Summary

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Official Symbol
c4h16orf87provided by Xenbase
Official Full Name
chromosome 4 C16orf87 homologprovided by Xenbase
Primary source
Xenbase:XB-GENE-998359
See related
Ensembl:ENSXETG00000003894
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
c16orf87
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (73140312..73156464, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (25114433..25129367, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene VPS35 retromer complex component Neighboring gene origin recognition complex subunit 6 Neighboring gene myosin light chain kinase 3 Neighboring gene glutamic-pyruvate transaminase (alanine aminotransferase) 2 Neighboring gene cell division cycle associated 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
UPF0547 protein C16orf87 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126641.1 → NP_001120113.1  UPF0547 protein C16orf87 homolog

    See identical proteins and their annotated locations for NP_001120113.1

    Status: PROVISIONAL

    Source sequence(s)
    BC158977
    UniProtKB/TrEMBL
    B0JYZ6
    Related
    ENSXETP00000008455.2, ENSXETT00000008455.4
    Conserved Domains (1) summary
    pfam10571
    Location:4 → 28
    UPF0547; uncharacterized protein family UPF0547

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    73140312..73156464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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