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C16orf87 chromosome 16 open reading frame 87 [ Homo sapiens (human) ]

Gene ID: 388272, updated on 9-Feb-2020

Summary

Official Symbol
C16orf87provided by HGNC
Official Full Name
chromosome 16 open reading frame 87provided by HGNC
Primary source
HGNC:HGNC:33754
See related
Ensembl:ENSG00000155330
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 20.7), bone marrow (RPKM 11.7) and 23 other tissues See more
Orthologs

Genomic context

See C16orf87 in Genome Data Viewer
Location:
16q11.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (46796603..46831471, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (46835959..46865074, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene myosin light chain kinase 3 Neighboring gene nuclear factor, erythroid 2 like 3 pseudogene Neighboring gene Sharpr-MPRA regulatory region 14543 Neighboring gene creatine kinase B pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC62018

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001436.4NP_001001436.1  UPF0547 protein C16orf87 isoform 1

    See identical proteins and their annotated locations for NP_001001436.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC007225, BC056676, BX647945
    Consensus CDS
    CCDS10724.1
    UniProtKB/Swiss-Prot
    Q6PH81
    Related
    ENSP00000285697.4, ENST00000285697.9
    Conserved Domains (1) summary
    pfam10571
    Location:1438
    UPF0547; Uncharacterized protein family UPF0547
  2. NM_001348660.2NP_001335589.1  UPF0547 protein C16orf87 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AC007225
    Consensus CDS
    CCDS86522.1
    UniProtKB/Swiss-Prot
    Q6PH81
    Related
    ENSP00000378285.2, ENST00000394806.6
    Conserved Domains (1) summary
    pfam10571
    Location:1438
    UPF0547; Uncharacterized protein family UPF0547
  3. NM_001348661.2NP_001335590.1  UPF0547 protein C16orf87 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate exon and contains another alternate exon compared to variant 1. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC007225
    Conserved Domains (1) summary
    pfam10571
    Location:1438
    UPF0547; Uncharacterized protein family UPF0547

RNA

  1. NR_145834.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007225, BX647945, HY180978
  2. NR_145835.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007225
  3. NR_145836.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007225, BX647945, DB460878
  4. NR_145837.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007225

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    46796603..46831471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024450271.1XP_024306039.1  UPF0547 protein C16orf87 isoform X1

    Conserved Domains (1) summary
    pfam10571
    Location:1438
    UPF0547; Uncharacterized protein family UPF0547
  2. XM_024450272.1XP_024306040.1  UPF0547 protein C16orf87 isoform X1

    Conserved Domains (1) summary
    pfam10571
    Location:1438
    UPF0547; Uncharacterized protein family UPF0547
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