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CBY1 chibby 1, beta catenin antagonist [ Sus scrofa (pig) ]

Gene ID: 100144768, updated on 8-Mar-2024

Summary

Gene symbol
CBY1
Gene description
chibby 1, beta catenin antagonist
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 13.5), kidney (RPKM 8.0) and 8 other tissues See more
Orthologs
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Genomic context

See CBY1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (9346087..9358155, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (6591181..6601767, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene GTP binding protein 1 Neighboring gene Josephin domain containing 1 Neighboring gene translocase of outer mitochondrial membrane 22 Neighboring gene family with sequence similarity 227 member A Neighboring gene uncharacterized LOC110260646 Neighboring gene DNA meiotic recombinase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General protein information

Preferred Names
protein chibby homolog 1
Names
PKD2 interactor
chibby family member 1, beta catenin antagonist

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128456.1NP_001121928.1  protein chibby homolog 1

    See identical proteins and their annotated locations for NP_001121928.1

    Status: PROVISIONAL

    Source sequence(s)
    EU366153
    UniProtKB/TrEMBL
    A0A4X1VSW9, A0A8D0ZQH0, A0A8D1VDW1, A0A8D1XXF6, B2CAW6
    Conserved Domains (1) summary
    pfam14645
    Location:2115
    Chibby; Chibby family

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    9346087..9358155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005655480.3XP_005655537.1  protein chibby homolog 1 isoform X1

    See identical proteins and their annotated locations for XP_005655537.1

    UniProtKB/TrEMBL
    A0A4X1VSW9, A0A8D0ZQH0, A0A8D1VDW1, A0A8D1XXF6, B2CAW6
    Conserved Domains (1) summary
    pfam14645
    Location:2115
    Chibby; Chibby family
  2. XM_005655481.3XP_005655538.1  protein chibby homolog 1 isoform X1

    See identical proteins and their annotated locations for XP_005655538.1

    UniProtKB/TrEMBL
    A0A4X1VSW9, A0A8D0ZQH0, A0A8D1VDW1, A0A8D1XXF6, B2CAW6
    Conserved Domains (1) summary
    pfam14645
    Location:2115
    Chibby; Chibby family