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prox1 prospero homeobox 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100134995, updated on 18-Sep-2024

Summary

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Official Symbol
prox1provided by Xenbase
Official Full Name
prospero homeobox 1provided by Xenbase
Primary source
Xenbase:XB-GENE-485327
See related
Ensembl:ENSXETG00000023176
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
xprox1; prospero
Orthologs
human mouse all
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Genomic context

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See prox1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (13722361..13786740, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (9953805..10016070, complement)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116411107 Neighboring gene SET and MYND domain containing 2 Neighboring gene ribosomal protein S6 kinase, 52kDa, polypeptide 1 Neighboring gene angel homolog 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within system development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
prospero homeobox protein 1
Names
Prox 1
prospero-related homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    13722361..13786740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004914779.4 → XP_004914836.1  prospero homeobox protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8J0R3T5, F6UD67
    Conserved Domains (1) summary
    pfam05044
    Location:579 → 731
    HPD; Homeo-prospero domain

  2. XM_012963949.3 → XP_012819403.1  prospero homeobox protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J0SF53, F6UD67
    Conserved Domains (1) summary
    pfam05044
    Location:581 → 733
    HPD; Homeo-prospero domain

  3. XM_004914780.4 → XP_004914837.1  prospero homeobox protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8J0R4I0, F6UD67
    Conserved Domains (1) summary
    pfam05044
    Location:579 → 730
    HPD; Homeo-prospero domain

  4. XM_002934704.5 → XP_002934750.2  prospero homeobox protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J0QK49, F6UD67
    Related
    ENSXETP00000050119.4, ENSXETT00000050119.4
    Conserved Domains (2) summary
    pfam05044
    Location:581 → 732
    HPD; Homeo-prospero domain
    pfam13863
    Location:228 → 261
    DUF4200; Domain of unknown function (DUF4200)

  5. XM_018094114.2 → XP_017949603.1  prospero homeobox protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J0SF53, F6UD67
Nucleotide Protein Strain
Heading Accession and Version

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