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gria3 glutamate receptor, ionotropic, AMPA 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100127683, updated on 18-Sep-2024

Summary

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Official Symbol
gria3provided by Xenbase
Official Full Name
glutamate receptor, ionotropic, AMPA 3provided by Xenbase
Primary source
Xenbase:XB-GENE-1010483
See related
Ensembl:ENSXETG00000019504
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
glur3
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
17
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (48578453..48755279)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (27356107..27533718)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105946046 Neighboring gene neurite extension and migration facto Neighboring gene marginal coil Xmc Neighboring gene uncharacterized LOC108648387 Neighboring gene THO complex 2 Neighboring gene X-linked inhibitor of apoptosis

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ligand-gated monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
  
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
  
located_in synapse IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glutamate receptor 3
Names
glutamate receptor, ionotrophic, AMPA 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113023.1 → NP_001106494.1  glutamate receptor 3 precursor

    See identical proteins and their annotated locations for NP_001106494.1

    Status: PROVISIONAL

    Source sequence(s)
    BC154691
    UniProtKB/TrEMBL
    A0A6I8RAF5, A8WGF6
    Related
    ENSXETP00000073095.2, ENSXETT00000104202.2
    Conserved Domains (2) summary
    cd13715
    Location:416 → 798
    PBP2_iGluR_AMPA; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtypes of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    cl10011
    Location:29 → 400
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    48578453..48755279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018096128.2 → XP_017951617.1  glutamate receptor 3 isoform X3

    UniProtKB/TrEMBL
    A0A6I8RAF5, A0A6I8SH00
    Related
    ENSXETP00000096500.2, ENSXETT00000068633.2

  2. XM_012967925.3 → XP_012823379.1  glutamate receptor 3 isoform X1

    UniProtKB/TrEMBL
    A0A6I8RAF5, A0A8J0SK19
    Related
    ENSXETP00000082542.2, ENSXETT00000103453.2
    Conserved Domains (4) summary
    cd13715
    Location:416 → 798
    PBP2_iGluR_AMPA; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtypes of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    pfam00060
    Location:548 → 828
    Lig_chan; Ligand-gated ion channel
    pfam01094
    Location:40 → 383
    ANF_receptor; Receptor family ligand binding region
    cl10011
    Location:29 → 400
    Periplasmic_Binding_Protein_Type_1; Type 1 periplasmic binding fold superfamily

  3. XM_018096127.2 → XP_017951616.1  glutamate receptor 3 isoform X2

    UniProtKB/TrEMBL
    A0A6I8RAF5, A0A8J0T4X9
    Conserved Domains (2) summary
    cd13715
    Location:416 → 798
    PBP2_iGluR_AMPA; The ligand-binding domain of the AMPA (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic acid) subtypes of ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily
    cd06387
    Location:29 → 403
    PBP1_iGluR_AMPA_GluR3; N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor

RNA

  1. XR_001171456.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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