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HCFC2 host cell factor C2 [ Equus caballus (horse) ]

Gene ID: 100067735, updated on 17-Aug-2024

Summary

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Official Symbol
HCFC2provided by VGNC
Official Full Name
host cell factor C2provided by VGNC
Primary source
VGNC:VGNC:56396
See related
Ensembl:ENSECAG00000023836
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 28 NC_009171.3 (28564692..28622791)

Chromosome 28 - NC_009171.3Genomic Context describing neighboring genes Neighboring gene thymine DNA glycosylase Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene nuclear transcription factor Y subunit beta Neighboring gene thioredoxin reductase 1, cytoplasmic-like Neighboring gene EP300 interacting inhibitor of differentiation 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009171.3 Chromosome 28 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009171.3 Reference EquCab3.0 Primary Assembly

    Range
    28564692..28622791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023631488.1 → XP_023487256.1  host cell factor 2 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2LI30
    Conserved Domains (3) summary
    cd00063
    Location:578 → 609
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:127 → 186
    Kelch; KELCH repeat [structural motif]
    cl26061
    Location:2 → 262
    PLN02193; nitrile-specifier protein

  2. XM_023631485.1 → XP_023487253.1  host cell factor 2 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H066, A0A3Q2HA72
    Related
    ENSECAP00000026336.1, ENSECAT00000046631.2
    Conserved Domains (3) summary
    cd00063
    Location:641 → 672
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:190 → 241
    Kelch; KELCH repeat [structural motif]
    cl26061
    Location:2 → 262
    PLN02193; nitrile-specifier protein

  3. XM_023631486.1 → XP_023487254.1  host cell factor 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2HA72, F6Y1K7
    Related
    ENSECAP00000021326.3, ENSECAT00000025626.4
    Conserved Domains (3) summary
    cd00063
    Location:641 → 672
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:190 → 241
    Kelch; KELCH repeat [structural motif]
    cl26061
    Location:2 → 262
    PLN02193; nitrile-specifier protein
Nucleotide Protein
Heading Accession and Version

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